PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco013206.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LSD
Protein Properties Length: 139aa    MW: 14368.8 Da    PI: 7.7401
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco013206.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.25.5e-132246125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 C+gCr+lL YP+GA+sV+Ca+C +V
  Aco013206.1 22 CSGCRNLLLYPIGATSVCCAVCSAV 46
                 **********************998 PP

2zf-LSD146.94.5e-156185125
      zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                 CggC+tlL+Y rGA+sV+C++C+tV
  Aco013206.1 61 CGGCHTLLMYIRGATSVQCSCCHTV 85
                 ************************9 PP

3zf-LSD140.83.7e-1399123125
      zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                  Cg+C+ lL+Y +GA+sV+Ca+C++V
  Aco013206.1  99 CGNCHMLLMYQYGARSVKCAVCNFV 123
                  ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.107.1E-519121No hitNo description
TIGRFAMsTIGR010536.4E-121949IPR005735Zinc finger, LSD1-type
PfamPF069433.3E-102246IPR005735Zinc finger, LSD1-type
SuperFamilySSF486955.12E-636105IPR011031Multihaem cytochrome
TIGRFAMsTIGR010538.0E-155887IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-126185IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.7E-1096126IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-1299123IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MPVPLAPYPF TPPNGAQNQL VCSGCRNLLL YPIGATSVCC AVCSAVTAVP PPGTEMAQLV  60
CGGCHTLLMY IRGATSVQCS CCHTVNLALE ANQVAHVNCG NCHMLLMYQY GARSVKCAVC  120
NFVTSVGASP SAEQKLST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847710.13e-86PREDICTED: protein LSD1
RefseqXP_011624573.13e-86PREDICTED: protein LSD1
SwissprotQ0J7V97e-80LSD1_ORYSJ; Protein LSD1
TrEMBLW1PNK23e-86W1PNK2_AMBTC; Uncharacterized protein
STRINGVIT_02s0012g00990.t016e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.36e-61lsd one like 1